GenetICA-Network /// Microarray version /// >>RNAseq version<< /// Mouse version

GenetICA-Network /// Microarray version /// >>RNAseq version<< /// Mouse version
© 2020 - Department of Medical Oncology, University Medical Center Groningen
Predictions available for 58,433 transcripts.
Predictions are based on gene expression profiles of 29,138 samples.
These samples represent many tissue types, disease states, cellular contexts, experimental variation and therapeutic/chemical perturbations.
Gene set database | Number of gene sets included |
Gene Ontology - Biological Process | 4205 |
Gene Ontology - Molecular Function | 855 |
Gene Ontology - Cellular Component | 532 |
REACTOME | 658 |
KEGG | 186 |
BIOCARTA | 213 |
Chemical and Genetic Perturbations | 2976 |
Transcription Factor Targets | 571 |
MicroRNA Targets | 205 |
Hallmark Gene Sets | 50 |
Cancer Gene Neighborhoods | 427 |
Cancer Modules | 414 |
Oncogenic Signatures | 189 |
Immunologic Signatures | 4872 |
Mammalian Phenotypes MGI | 4071 |
HPO Ontology | 3135 |
Precompiled version for the mac OS (11.1) of Analyertool 5 (to run first install QT version 5.15.1): link - README
For question, contact me at r.s.n.fehrmann@umcg.nl
Also see my website at: www.rudolffehrmann.nl
Support data for GenetICA-Network /// RNAseq version
consensus independent component results | Download links |
consensus independent components | link |
consensus mixing matrix | link |
gene set definitions | Download links |
gene set definitions: Gene Ontology - Biological Process (MSigDB v6.2) | link |
gene set definitions: Gene Ontology - Molecular Function (MSigDB v6.2) | link |
gene set definitions: Gene Ontology - Cellular Component (MSigDB v6.2) | link |
gene set definitions: REACTOME (MSigDB v6.2) | link |
gene set definitions: KEGG (MSigDB v6.2) | link |
gene set definitions: BIOCARTA (MSigDB v6.2) | link |
gene set definitions: Chemical and Genetic Perturbations (CGP MSigDB v6.2) | link |
gene set definitions: Transcription Factor Targets (TFT MSigDB v6.2) | link |
gene set definitions: MicroRNA Targets (MIR MSigDB v6.2) | link |
gene set definitions: Hallmark Gene Sets (MSigDB v6.2) | link |
gene set definitions: Cancer Gene Neighborhoods (CGN MSigDB v6.2) | link |
gene set definitions: Cancer Modules (CM MSigDB v6.2) | link |
gene set definitions: Oncogenic Signatures (MSigDB v6.2) | link |
gene set definitions: Immunologic Signatures (MSigDB v6.2) | link |
gene set definitions: Mammalian Phenotypes | link |
gene set definitions: Human Phenotype Ontology | link |
prediction scores for all gene/gene set combination | Download links |
Hallmark | link |
Oncogenic Signatures | link |
BIOCARTA | link |
KEGG | link |
MicroRNA Targets | link |
Cancer Gene Neighborhoods | link |
Cancer Modules | link |
REACTOME | link |
Gene Ontology - Cellular Component | link |
Gene Ontology - Molecular Function | link |
Gene Ontology - Biological Process | link |
Chemical and Genetic Pertubations | link |
Transcription Factor Targets | link |
Immunologic Signatures | link |
Mammalian Phenotypes | link |
Human Phenotype Ontology | link |
mean vector of gene set members in consensus mixing matrix | Download links |
Hallmark | link |
Oncogenic Signatures | link |
BIOCARTA | link |
KEGG | link |
MicroRNA Targets | link |
Cancer Gene Neighborhoods | link |
Cancer Modules | link |
REACTOME | link |
Gene Ontology - Cellular Component | link |
Gene Ontology - Molecular Function | link |
Gene Ontology - Biological Process | link |
Chemical and Genetic Pertubations | link |
Transcription Factor Targets | link |
Immunologic Signatures | link |
Mammalian Phenotypes | link |
Human Phenotype Ontology | link |